Datasets

Datasets are contributed sets of files associated with imaging one sample type with the same experimental conditions. Learn More

309 of 309 Datasets

Dataset Name

EMPIAR ID

Organism Name

Runs

Annotated Objects

key visualization for Affinity-Captured Endo-/Lysosomes

Affinity-Captured Endo-/Lysosomes

Dataset ID: DS-10444

Hannah Siems, Yue Yu, Ariana Peck, Jonathan Schwartz, Elizabeth Montabana, Mohammadreza Paraan, Daniel Serwas

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Homo Sapiens

181

  • membrane
key visualization for Synaptosomes from rat hippocampi (without centrifugation)

Synaptosomes from rat hippocampi (without centrifugation)

Dataset ID: DS-10443

Mallak Ali, Julia Peukes, Yue Yu, Ariana Peck, ... , Shu-Hsien Sheu, Mohammadreza Paraan

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Sprague Dawley Rat

170

  • membrane
key visualization for CZII - CryoET Object Identification Challenge - Experimental Training Data

CZII - CryoET Object Identification Challenge - Experimental Training Data

Dataset ID: DS-10440

Ariana Peck, Yue Yu, Jonathan Schwartz, ... , Kyle I. S. Harrington, Mohammadreza Paraan

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7

  • Beta-amylase
  • Beta-galactosidase
  • cytosolic ribosome
  • 3 More Objects
key visualization for CZII - CryoET Object Identification Challenge - Simulated Training Data

CZII - CryoET Object Identification Challenge - Simulated Training Data

Dataset ID: DS-10441

Jonathan Schwartz, Kyle I. S. Harrington, Mohammadreza Paraan

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--

27

  • Beta-amylase
  • Beta-galactosidase
  • cytosolic ribosome
  • 4 More Objects
key visualization for CryoET of near-minimal cells Mycoplasma mycoides JCVI-Syn3A for the development of subtomogram averaging pipelines

CryoET of near-minimal cells Mycoplasma mycoides JCVI-Syn3A for the development of subtomogram averaging pipelines

Dataset ID: DS-10442

Mallak Ali, Ariana Peck, Yue Yu, Jonathan Schwartz, ... , Mohammadreza Paraan

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Mycoplasma mycoides subsp. capri str. GM12

262

  • cytosolic ribosome
  • membrane
key visualization for CZ Imaging Institute simulated dataset 1

CZ Imaging Institute simulated dataset 1

Dataset ID: DS-10439

Jonathan Schwartz, Bridget Carragher

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27

  • Alkaline phosphatase, placental type
  • cytosolic ribosome
  • GroEL-GroES complex
  • 4 More Objects
key visualization for Cryo-ET datasets (1 and 2) of dormant microporidian spores from Encephalitozoon intestinalis

Cryo-ET datasets (1 and 2) of dormant microporidian spores from Encephalitozoon intestinalis

Dataset ID: DS-10436

Mahrukh Usmani, Nicolas Coudray, ... , Damian C. Ekiert, Gira Bhabha

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Encephalitozoon intestinalis

91

  • microsporidian-type endospore
  • microsporidian-type exospore
  • nuclear envelope
  • 5 More Objects
key visualization for Cryo-ET dataset of dormant microporidian spores from Encephalitozoon hellem

Cryo-ET dataset of dormant microporidian spores from Encephalitozoon hellem

Dataset ID: DS-10438

Kotaro Kelley, Gira Bhabha, Alex J. Noble, Clinton S. Potter, Bridget Carragher

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Encephalitozoon hellem

12

  • microsporidian-type endospore
  • microsporidian-type exospore
  • plasma membrane
  • 3 More Objects
key visualization for Cryo-ET dataset (3) of dormant microporidian spores from Encephalitozoon intestinalis

Cryo-ET dataset (3) of dormant microporidian spores from Encephalitozoon intestinalis

Dataset ID: DS-10437

Mahrukh Usmani, Nicolas Coudray, ... , Damian C. Ekiert, Gira Bhabha

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Encephalitozoon intestinalis

94

  • cellular anatomical entity
  • microsporidian-type endospore
  • microsporidian-type exospore
  • 7 More Objects
key visualization for In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling - Full Dataset
EMPIAR-11830

Chlamydomonas reinhardtii

1811

  • membrane
key visualization for In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling

In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling

Dataset ID: DS-10301

Ron Kelley, Sagar Khavnekar, ... , Abhay Kotecha

EMPIAR-11756

Chlamydomonas reinhardtii

18

  • cytosolic ribosome
  • F1-F0 complex
  • membrane
  • 3 More Objects
key visualization for Severe acute respiratory syndrome coronavirus 2

Severe acute respiratory syndrome coronavirus 2

Dataset ID: DS-10006

Zunlong Ke, Joaquin Oton, Kun Qu, ... , John Briggs

EMPIAR-10493

Severe acute respiratory syndrome coronavirus 2

156

  • membrane
  • SARS-CoV2 spike protein
key visualization for Microtubule doublet from mouse sperm

Microtubule doublet from mouse sperm

Dataset ID: DS-10005

Zhen Chen, ... , Ronald D. Vale, David A. Agard

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Mus musculus

39

  • membrane
  • microtubule doublet 48 nm repeat
  • microtubule doublet 96 nm repeat
key visualization for M. pneumoniae MP PrkC 27.5KX

M. pneumoniae MP PrkC 27.5KX

Dataset ID: DS-10296

Jian Shi, Grant Jensen

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Mycoplasma pneumoniae

65

  • membrane
key visualization for E. coli pLE7_1mM_IPTG

E. coli pLE7_1mM_IPTG

Dataset ID: DS-10193

Matt Swulius, Grant Jensen

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Escherichia coli

15

  • membrane
key visualization for HUVECs-pNLGFP-VPS4DN

HUVECs-pNLGFP-VPS4DN

Dataset ID: DS-10186

Cora Woodward, Grant Jensen

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Homo sapiens

22

  • membrane
key visualization for G. hansenii wn16-4

G. hansenii wn16-4

Dataset ID: DS-10036

William Nicolas, Grant Jensen

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Gluconacetobacter hansenii

8

  • membrane
key visualization for G. hansenii gh6-3

G. hansenii gh6-3

Dataset ID: DS-10031

William Nicolas, Grant Jensen

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Gluconacetobacter hansenii

1

  • membrane
key visualization for H.pylori 26695 delta-cagH / AGS

H.pylori 26695 delta-cagH / AGS

Dataset ID: DS-10152

Yi-Wei Chang, Grant Jensen

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Helicobacter pylori

72

  • membrane
key visualization for H.pylori 26695 delta-PAI / AGS

H.pylori 26695 delta-PAI / AGS

Dataset ID: DS-10149

Yi-Wei Chang, Grant Jensen

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Helicobacter pylori

37

  • membrane
  • 1
  • 2
  • 3
  • 4
  • 5
  • 16