Depositions

Depositions are collections of annotations, or imaging datasets containing annotations created using one or more methods contributed at once. Learn More

25 of 25 Depositions

Deposition Name

Deposition Date

Annotations

Annotated Objects

Object Shape Type

key visualization for Affinity-Captured Endo-/Lysosomes

Affinity-Captured Endo-/Lysosomes

Deposition ID: CZCDP-10318

Hannah Siems, Yue Yu, Ariana Peck, Jonathan Schwartz, Elizabeth Montabana, Mohammadreza Paraan, Daniel Serwas

2024-12-06

181

Across 1 Dataset

  • membrane
  • Segmentation Mask
key visualization for Manual annotations of type IV protein secretion system complexes
2024-12-03

31

Across 4 Datasets

  • type IV secretion system complex
  • Oriented Point
key visualization for Manual annotations of type II protein secretion system complexes
2024-12-03

6

Across 1 Dataset

  • type II protein secretion system complex
  • Oriented Point
key visualization for Manual annotations of complete bacterial-type flagellum basal bodies
2024-12-03

40

Across 7 Datasets

  • bacterial-type flagellum basal body
  • Oriented Point
key visualization for Cryo-ET of isolated segments of synaptic terminals, synaptosomes, from rat hippocampi

Cryo-ET of isolated segments of synaptic terminals, synaptosomes, from rat hippocampi

Deposition ID: CZCDP-10313

Mallak Ali, Julia Peukes, Yue Yu, Ariana Peck, ... , Shu-Hsien Sheu, Mohammadreza Paraan

2024-11-26

170

Across 1 Dataset

  • membrane
  • Segmentation Mask
key visualization for CZII - CryoET Object Identification Challenge

CZII - CryoET Object Identification Challenge

Deposition ID: CZCDP-10310

Ariana Peck, Yue Yu, Jonathan Schwartz, ... , Kyle I. S. Harrington, Mohammadreza Paraan

2024-10-30

231

Across 2 Datasets

  • Beta-amylase
  • Beta-galactosidase
  • cytosolic ribosome
  • 4 More Objects
  • Oriented Point
  • Point
  • Segmentation Mask
key visualization for CryoET of near-minimal cells Mycoplasma mycoides JCVI-Syn3A for the development of subtomogram averaging pipelines

CryoET of near-minimal cells Mycoplasma mycoides JCVI-Syn3A for the development of subtomogram averaging pipelines

Deposition ID: CZCDP-10312

Mallak Ali, Ariana Peck, Yue Yu, Jonathan Schwartz, ... , Mohammadreza Paraan

2024-10-15

523

Across 1 Dataset

  • cytosolic ribosome
  • membrane
  • Point
  • Segmentation Mask
key visualization for CZ Imaging Institute simulated data

CZ Imaging Institute simulated data

Deposition ID: CZCDP-10309

Jonathan Schwartz, Bridget Carragher

2024-08-21

189

Across 1 Dataset

  • Alkaline phosphatase, placental type
  • cytosolic ribosome
  • GroEL-GroES complex
  • 4 More Objects
  • Oriented Point
  • Segmentation Mask
key visualization for In situ architecture of the polar tube invasion apparatus from microsporidian parasites

In situ architecture of the polar tube invasion apparatus from microsporidian parasites

Deposition ID: CZCDP-10307

Mahrukh Usmani, Nicolas Coudray, ... , Damian C. Ekiert, Gira Bhabha

2024-07-09

78

Across 3 Datasets

  • cellular anatomical entity
  • microsporidian-type endospore
  • microsporidian-type exospore
  • 8 More Objects
  • Segmentation Mask
key visualization for membrain-seg gas vesicle shell predictions

membrain-seg gas vesicle shell predictions

Deposition ID: CZCDP-10308

Utz Heinrich Ermel, ...

2024-06-04

486

Across 5 Datasets

  • gas vesicle shell
  • Segmentation Mask
key visualization for Manual annotations of Type IV pilus

Manual annotations of Type IV pilus

Deposition ID: CZCDP-10305

Mohammed Kaplan

2024-06-03

101

Across 2 Datasets

  • type IV pilus
  • Oriented Point
key visualization for membrain-seg membrane predictions

membrain-seg membrane predictions

Deposition ID: CZCDP-10303

Utz Heinrich Ermel, ...

2024-05-20

14,400

Across 287 Datasets

  • membrane
  • Segmentation Mask
key visualization for Manual annotations of partial bacterial-type flagellum basal bodies
2024-05-20

307

Across 13 Datasets

  • flagellar basal body, MS ring
  • Oriented Point
key visualization for Membrane segmentations of denoised tomograms

Membrane segmentations of denoised tomograms

Deposition ID: CZCDP-10304

Xueying Zhan, Yujia Gao, Min Xu

2024-04-12

99

Across 1 Dataset

  • membrane
  • Segmentation Mask
key visualization for In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling

In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling

Deposition ID: CZCDP-10300

Ron Kelley, Sagar Khavnekar, ... , Abhay Kotecha

2024-04-09

30

Across 1 Dataset

  • cytosolic ribosome
  • F1-F0 complex
  • microtubule
  • 2 More Objects
  • Oriented Point
key visualization for TARDIS membrane predictions

TARDIS membrane predictions

Deposition ID: CZCDP-10301

Robert Kiewisz, Tristan Bepler

2024-02-20

12,969

Across 295 Datasets

  • membrane
  • Instance Segmentation
  • Segmentation Mask
key visualization for Architecture of the Chlamydomonas reinhardtii ciliary base

Architecture of the Chlamydomonas reinhardtii ciliary base

Deposition ID: CZCDP-10009

Hugo G. van den Hoek, Nikolai Klena, ... , Gaia Pigino, Virginie Hamel, Paul Guichard, Benjamin D. Engel

2023-11-01

140

Across 1 Dataset

  • Dynein-1b
  • IFT A complex
  • IFT B complex
  • 3 More Objects
  • Oriented Point
key visualization for Structures and distributions of severe acute respiratory syndrome coronavirus 2 spike proteins

Structures and distributions of severe acute respiratory syndrome coronavirus 2 spike proteins

Deposition ID: CZCDP-10006

Zunlong Ke, Joaquin Oton, Kun Qu, ... , John Briggs

2023-10-11

156

Across 1 Dataset

  • SARS-CoV2 spike protein
  • Oriented Point
key visualization for Surface morphometrics of organellar membranes

Surface morphometrics of organellar membranes

Deposition ID: CZCDP-10010

Benjamin A. Barad, ... , Danielle A Grotjahn

2023-10-01

88

Across 1 Dataset

  • endoplasmic reticulum membrane
  • mitochondrial inner membrane
  • mitochondrial outer membrane
  • Segmentation Mask
key visualization for Warp/M evaluation dataset - Mycoplasma pneumoniae treated with chloramphenicol

Warp/M evaluation dataset - Mycoplasma pneumoniae treated with chloramphenicol

Deposition ID: CZCDP-10003

Tegunov Dimitry, Xue Liang, ... , Cramer Patrick, Julia Mahamid

2023-10-01

65

Across 1 Dataset

  • cytosolic ribosome
  • Oriented Point
  • 1
  • 2