Depositions

Depositions are collections of data submitted together. Learn More

105 of 105 Depositions

Deposition Name
Deposition Date
Data Types and Counts
key visualization for PACE-tomo of purified Escherichia coli 70S ribosomes

PACE-tomo of purified Escherichia coli 70S ribosomes

Deposition ID: CZCDP-10355

  • Fabian Eisenstein,
  • ... ,
  • Radostin Danev

2026-07-09

Tomograms: 486

key visualization for Cryo-electron tomography of purified E. coli 70S ribosomes acquired by fast-incremental single-exposure (FISE) tilt series

Cryo-electron tomography of purified E. coli 70S ribosomes acquired by fast-incremental single-exposure (FISE) tilt series

Deposition ID: CZCDP-10354

  • Fabian Eisenstein,
  • ... ,
  • Martin Pilhofer

2026-07-09

Tomograms: 72

key visualization for AreTomo3 reprocessing of isolated synaptic vesicle tomograms (EMPIAR-12794)

AreTomo3 reprocessing of isolated synaptic vesicle tomograms (EMPIAR-12794)

Deposition ID: CZCDP-10359

  • Rahel Woldeyes,
  • ... ,
  • Dari Kimanius

2026-06-30

Annotations: 95

Tomograms: 190

key visualization for Octopi and TopCup particle picks for a self-configuring in situ cryoET structure-determination workflow

Octopi and TopCup particle picks for a self-configuring in situ cryoET structure-determination workflow

Deposition ID: CZCDP-10358

  • Jonathan Schwartz,
  • ... ,
  • Dari Kimanius

2026-06-24

Annotations: 6,372

key visualization for CryoETSim: simulated cryo-electron tomograms for self-supervised representation learning with the CryoSiam framework

CryoETSim: simulated cryo-electron tomograms for self-supervised representation learning with the CryoSiam framework

Deposition ID: CZCDP-10348

  • Frosina Stojanovska,
  • ... ,
  • Julia Mahamid,
  • Anna Kreshuk,
  • Judith B. Zaugg

2026-06-24

Annotations: 39,347

Tomograms: 1,600

key visualization for Cryo-electron tomography of the Rickettsia parkeri cell surface reveals OmpB is required for the S-layer

Cryo-electron tomography of the Rickettsia parkeri cell surface reveals OmpB is required for the S-layer

Deposition ID: CZCDP-10353

  • Meghan C. Bacher,
  • ... ,
  • Matthew D. Welch

2026-06-08

Tomograms: 190

key visualization for Crossed laser phase plate (xLPP) demonstration tomogram of single-layer apoferritin

Crossed laser phase plate (xLPP) demonstration tomogram of single-layer apoferritin

Deposition ID: CZCDP-10352

  • Joshua Hutchings,
  • ... ,
  • Yue Yu,
  • Pavel K. Olshin

2026-05-20

Tomograms: 1

key visualization for The POPSICLE Yeast Segmentation Dataset: consolidated multi-class organelle segmentations for S. pombe cryo-ET tomograms

The POPSICLE Yeast Segmentation Dataset: consolidated multi-class organelle segmentations for S. pombe cryo-ET tomograms

Deposition ID: CZCDP-10351

  • Jonathan Schwartz,
  • Utz Heinrich Ermel,
  • ... ,
  • Dari Kimanius

2026-05-04

Annotations: 80

key visualization for The POPSICLE Bacterial Segmentation Dataset: multi-class compartment segmentations for bacterial cryo-ET data

The POPSICLE Bacterial Segmentation Dataset: multi-class compartment segmentations for bacterial cryo-ET data

Deposition ID: CZCDP-10350

  • Jonathan Schwartz,
  • Utz Heinrich Ermel,
  • ... ,
  • Dari Kimanius

2026-05-04

Annotations: 317

Tomograms: 80

key visualization for BYU - Locating Bacterial Flagellar Motors Challenge Test Dataset

BYU - Locating Bacterial Flagellar Motors Challenge Test Dataset

Deposition ID: CZCDP-10347

  • Stephano Maggi,
  • ...

2026-04-29

Annotations: 327

Tomograms: 843

key visualization for Cryo-electron tomography of Arabidopsis thaliana — plant cell walls in CEMOVIS sections of cultured cells and intact pollen tubes in cryo-FIB lamellae

Cryo-electron tomography of Arabidopsis thaliana — plant cell walls in CEMOVIS sections of cultured cells and intact pollen tubes in cryo-FIB lamellae

Deposition ID: CZCDP-10346

  • William Jules Nicolas,
  • Grant Jensen,
  • Elliot M Meyerowitz

2026-04-28

Tomograms: 49

key visualization for Agent-Curated Membrane Segmentations and Compartment Annotations for Bdellovibrio bacteriovorus Cryo-ET Data.

Agent-Curated Membrane Segmentations and Compartment Annotations for Bdellovibrio bacteriovorus Cryo-ET Data.

Deposition ID: CZCDP-10338

  • Utz Heinrich Ermel,
  • ...

2026-04-20

Annotations: 82

key visualization for Cryo-electron tomography of centrosomes in C. elegans embryonic cells

Cryo-electron tomography of centrosomes in C. elegans embryonic cells

Deposition ID: CZCDP-10345

  • Fergus Tollervey,
  • ... ,
  • Jeffrey B. Woodruff,
  • Julia Mahamid

2026-03-26

Annotations: 53

Tomograms: 12

key visualization for Cryo-electron tomography of HeLa cells under mitochondrial proteostatic stress

Cryo-electron tomography of HeLa cells under mitochondrial proteostatic stress

Deposition ID: CZCDP-10344

  • Kenneth Ehses,
  • ... ,
  • Ruben Fernandez-Busnadiego

2026-03-24

Annotations: 412

Tomograms: 824

key visualization for Expert-in-the-loop guided automatic segmentations of cells and cellular structures using SABER

Expert-in-the-loop guided automatic segmentations of cells and cellular structures using SABER

Deposition ID: CZCDP-10331

  • Jonathan Schwartz,
  • ... ,
  • Dari Kimanius

2026-03-09

Annotations: 4,259

key visualization for CZII 2-protein phantom (version 1.0)

CZII 2-protein phantom (version 1.0)

Deposition ID: CZCDP-10341

  • Yue Yu,
  • Mallak Ali,
  • Mohammadreza Paraan,
  • Elizabeth Montabana,
  • ...

2026-01-09

Annotations: 1,516

Tomograms: 624

key visualization for Large-scale cryo-ET dataset of affinity-captured organelles (LAMP1/TMEM192) from HEK293T cells under multiple physiological states

Large-scale cryo-ET dataset of affinity-captured organelles (LAMP1/TMEM192) from HEK293T cells under multiple physiological states

Deposition ID: CZCDP-10318

  • Rahel Woldeyes,
  • Hannah Siems,
  • Bisco Hill,
  • ... ,
  • Daniel Serwas

2025-12-18

Annotations: 25,210

Tomograms: 27,388

key visualization for CryoET of NPC1-Deficient Human HEK293T Cells

CryoET of NPC1-Deficient Human HEK293T Cells

Deposition ID: CZCDP-10337

  • Hannah Siems,
  • Garrett Greenan,
  • ... ,
  • Daniel Serwas

2025-11-24

Annotations: 5

Tomograms: 8

key visualization for CryoET of isolated synaptic vesicles from mouse brain

CryoET of isolated synaptic vesicles from mouse brain

Deposition ID: CZCDP-10334

  • Uljana Kravčenko,
  • ... ,
  • Mikhail Kudryashev

2025-11-17

Annotations: 380

Tomograms: 95

key visualization for In situ virus-like particles in E. coli for microscopy and pipeline benchmarking

In situ virus-like particles in E. coli for microscopy and pipeline benchmarking

Deposition ID: CZCDP-10336

  • Mallak Ali,
  • ... ,
  • Mohammadreza Paraan

2025-11-07

Annotations: 2,108

Tomograms: 1,694

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