Depositions

Depositions are collections of data submitted together. Learn More

99 of 99 Depositions

Deposition Name
Deposition Date
Data Types and Counts
key visualization for Crossed laser phase plate (xLPP) demonstration tomogram of single-layer apoferritin

Crossed laser phase plate (xLPP) demonstration tomogram of single-layer apoferritin

Deposition ID: CZCDP-10352

  • Joshua Hutchings,
  • ... ,
  • Yue Yu,
  • Pavel K. Olshin

2026-05-20

Tomograms: 1

key visualization for The POPSICLE Yeast Segmentation Dataset: consolidated multi-class organelle segmentations for S. pombe cryo-ET tomograms

The POPSICLE Yeast Segmentation Dataset: consolidated multi-class organelle segmentations for S. pombe cryo-ET tomograms

Deposition ID: CZCDP-10351

  • Jonathan Schwartz,
  • Utz Heinrich Ermel,
  • ... ,
  • Dari Kimanius

2026-05-04

Annotations: 80

key visualization for The POPSICLE Bacterial Segmentation Dataset: multi-class compartment segmentations for bacterial cryo-ET data

The POPSICLE Bacterial Segmentation Dataset: multi-class compartment segmentations for bacterial cryo-ET data

Deposition ID: CZCDP-10350

  • Jonathan Schwartz,
  • Utz Heinrich Ermel,
  • ... ,
  • Dari Kimanius

2026-05-04

Annotations: 317

Tomograms: 80

key visualization for BYU - Locating Bacterial Flagellar Motors Challenge Test Dataset

BYU - Locating Bacterial Flagellar Motors Challenge Test Dataset

Deposition ID: CZCDP-10347

  • Stephano Maggi,
  • ...

2026-04-29

Annotations: 275

Tomograms: 843

key visualization for Cryo-electron tomography of Arabidopsis thaliana — plant cell walls in CEMOVIS sections of cultured cells and intact pollen tubes in cryo-FIB lamellae

Cryo-electron tomography of Arabidopsis thaliana — plant cell walls in CEMOVIS sections of cultured cells and intact pollen tubes in cryo-FIB lamellae

Deposition ID: CZCDP-10346

  • William Jules Nicolas,
  • Grant Jensen,
  • Elliot M Meyerowitz

2026-04-28

Tomograms: 49

key visualization for Agent-Curated Membrane Segmentations and Compartment Annotations for Bdellovibrio bacteriovorus Cryo-ET Data.

Agent-Curated Membrane Segmentations and Compartment Annotations for Bdellovibrio bacteriovorus Cryo-ET Data.

Deposition ID: CZCDP-10338

  • Utz Heinrich Ermel,
  • ...

2026-04-20

Annotations: 82

key visualization for Cryo-electron tomography of centrosomes in C. elegans embryonic cells

Cryo-electron tomography of centrosomes in C. elegans embryonic cells

Deposition ID: CZCDP-10345

  • Fergus Tollervey,
  • ... ,
  • Jeffrey B. Woodruff,
  • Julia Mahamid

2026-03-26

Annotations: 53

Tomograms: 12

key visualization for Cryo-electron tomography of HeLa cells under mitochondrial proteostatic stress

Cryo-electron tomography of HeLa cells under mitochondrial proteostatic stress

Deposition ID: CZCDP-10344

  • Kenneth Ehses,
  • ... ,
  • Ruben Fernandez-Busnadiego

2026-03-24

Annotations: 412

Tomograms: 824

key visualization for Expert-in-the-loop guided automatic segmentations of cells and cellular structures using SABER

Expert-in-the-loop guided automatic segmentations of cells and cellular structures using SABER

Deposition ID: CZCDP-10331

  • Jonathan Schwartz,
  • ... ,
  • Dari Kimanius

2026-03-09

Annotations: 4,259

key visualization for CZII 2-protein phantom (version 1.0)

CZII 2-protein phantom (version 1.0)

Deposition ID: CZCDP-10341

  • Yue Yu,
  • Mallak Ali,
  • Mohammadreza Paraan,
  • Elizabeth Montabana,
  • ...

2026-01-09

Annotations: 1,516

Tomograms: 624

key visualization for Large-scale cryo-ET dataset of affinity-captured organelles (LAMP1/TMEM192) from HEK293T cells under multiple physiological states

Large-scale cryo-ET dataset of affinity-captured organelles (LAMP1/TMEM192) from HEK293T cells under multiple physiological states

Deposition ID: CZCDP-10318

  • Rahel Woldeyes,
  • Hannah Siems,
  • Bisco Hill,
  • ... ,
  • Daniel Serwas

2025-12-18

Annotations: 25,210

Tomograms: 27,388

key visualization for CryoET of NPC1-Deficient Human HEK293T Cells

CryoET of NPC1-Deficient Human HEK293T Cells

Deposition ID: CZCDP-10337

  • Hannah Siems,
  • Garrett Greenan,
  • ... ,
  • Daniel Serwas

2025-11-24

Annotations: 5

Tomograms: 8

key visualization for CryoET of isolated synaptic vesicles from mouse brain

CryoET of isolated synaptic vesicles from mouse brain

Deposition ID: CZCDP-10334

  • Uljana Kravčenko,
  • ... ,
  • Mikhail Kudryashev

2025-11-17

Annotations: 380

Tomograms: 95

key visualization for In situ virus-like particles in E. coli for microscopy and pipeline benchmarking

In situ virus-like particles in E. coli for microscopy and pipeline benchmarking

Deposition ID: CZCDP-10336

  • Mallak Ali,
  • ... ,
  • Mohammadreza Paraan

2025-11-07

Annotations: 2,108

Tomograms: 1,694

key visualization for CryoLens - simulated training data

CryoLens - simulated training data

Deposition ID: CZCDP-10335

  • Kyle I. S. Harrington,
  • ... ,
  • Alan R. Lowe

2025-11-03

Annotations: 1,737

Tomograms: 200

key visualization for Training annotations and octopi predictions of ribosomes in unroofed human cells

Training annotations and octopi predictions of ribosomes in unroofed human cells

Deposition ID: CZCDP-10333

  • Daniel Ji,
  • Jonathan Schwartz,
  • Utz Heinrich Ermel

2025-09-17

Annotations: 44

key visualization for BYU - Locating Bacterial Flagellar Motors Challenge Train Annotations

BYU - Locating Bacterial Flagellar Motors Challenge Train Annotations

Deposition ID: CZCDP-10332

  • C. Braxton Owens,
  • Mohammed Kaplan,
  • Fabian Isensee,
  • Brenden Artley,
  • Andrew Darley,
  • Gus L.W. Hart,
  • Eben Lonsdale,
  • Jackson Pond

2025-08-06

Annotations: 1,559

key visualization for CryoET of near-minimal cells Mycoplasma mycoides JCVI-Syn3A for the development of subtomogram averaging pipelines

CryoET of near-minimal cells Mycoplasma mycoides JCVI-Syn3A for the development of subtomogram averaging pipelines

Deposition ID: CZCDP-10312

  • Mallak Ali,
  • Ariana Peck,
  • Yue Yu,
  • Jonathan Schwartz,
  • ... ,
  • Mohammadreza Paraan

2025-07-25

Annotations: 630

Tomograms: 738

key visualization for CZII CryoET Object Identification Challenge - 10th place solution - Josef Slavicek

CZII CryoET Object Identification Challenge - 10th place solution - Josef Slavicek

Deposition ID: CZCDP-10328

  • Josef Slavicek

2025-02-25

Annotations: 2,875

key visualization for CZII CryoET Object Identification Challenge - 9th place solution - Avengers

CZII CryoET Object Identification Challenge - 9th place solution - Avengers

Deposition ID: CZCDP-10327

  • Koki Wada

2025-02-25

Annotations: 2,385

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