All Depositions

Deposition

Cryo-ET of isolated segments of synaptic terminals, synaptosomes, from rat hippocampi

  • Deposition ID:CZCDP-10313

Release Date: 2024-11-26

Last Modified: 2024-11-26

key visualization for Cryo-ET of isolated segments of synaptic terminals, synaptosomes, from rat hippocampi

Deposition Overview

CryoET tomograms of synaptosomes for the development of segmentation and subtomogram averaging pipelines for synaptic vesicle proteins, post-synaptic receptors, etc. Each dataset has a slightly different sample preparation conditions. The tomograms collectively have a combination of full synaptosomes, presynaptic terminals, and other co-purified organelles that are not synaptosomes such as mitochondria.

Deposition Data

Annotations:484

Publications

Not Submitted

Related Databases

Not Submitted

Annotation Methods Summary

Method Type

Automated

Method Links

Datasets with Deposition Data

6 of 6 Datasets

Dataset Name
Organism
Runs

With deposition data

Annotations

Deposition only

Annotated Objects

Deposition only

key visualization for Synaptosomes from rat hippocampi (180 mg, 800 rpm, Au grid, low tilt range, 1:50)
Synaptosomes from rat hippocampi (180 mg, 800 rpm, Au grid, low tilt range, 1:50)

Dataset ID: DS-10449

  • Mallak Ali,
  • Julia Peukes,
  • Yue Yu,
  • Ariana Peck,
  • ... ,
  • Shu-Hsien Sheu,
  • Mohammadreza Paraan
Sprague Dawley Rat
32
32
  • membrane
key visualization for Synaptosomes from rat hippocampi (200 mg, no centrifugation, Cu grid, low tilt range, 1:50)
Synaptosomes from rat hippocampi (200 mg, no centrifugation, Cu grid, low tilt range, 1:50)

Dataset ID: DS-10447

  • Mallak Ali,
  • Julia Peukes,
  • Yue Yu,
  • Ariana Peck,
  • ... ,
  • Shu-Hsien Sheu,
  • Mohammadreza Paraan
Sprague Dawley Rat
76
76
  • membrane
key visualization for Synaptosomes from rat hippocampi (10 wk rat, 180 mg, 600 rpm, Au grid, low tilt range, 1:10)
Synaptosomes from rat hippocampi (10 wk rat, 180 mg, 600 rpm, Au grid, low tilt range, 1:10)

Dataset ID: DS-10450

  • Mallak Ali,
  • Julia Peukes,
  • Yue Yu,
  • Ariana Peck,
  • ... ,
  • Shu-Hsien Sheu,
  • Mohammadreza Paraan
Sprague Dawley Rat
112
112
  • membrane
key visualization for Synaptosomes from rat hippocampi (10 wk rat, 180 mg, 800 rpm, Au grid, low tilt range, 1:10)
Synaptosomes from rat hippocampi (10 wk rat, 180 mg, 800 rpm, Au grid, low tilt range, 1:10)

Dataset ID: DS-10451

  • Mallak Ali,
  • Julia Peukes,
  • Yue Yu,
  • Ariana Peck,
  • ... ,
  • Shu-Hsien Sheu,
  • Mohammadreza Paraan
Sprague Dawley Rat
68
68
  • membrane
key visualization for Synaptosomes from rat hippocampi (180 mg, 800 rpm, Au grid, high tilt range, 1:50)
Synaptosomes from rat hippocampi (180 mg, 800 rpm, Au grid, high tilt range, 1:50)

Dataset ID: DS-10448

  • Mallak Ali,
  • Julia Peukes,
  • Yue Yu,
  • Ariana Peck,
  • ... ,
  • Shu-Hsien Sheu,
  • Mohammadreza Paraan
Sprague Dawley Rat
26
26
  • membrane
key visualization for Synaptosomes from rat hippocampi (without centrifugation)
Synaptosomes from rat hippocampi (without centrifugation)

Dataset ID: DS-10443

  • Mallak Ali,
  • Julia Peukes,
  • Yue Yu,
  • Ariana Peck,
  • ... ,
  • Shu-Hsien Sheu,
  • Mohammadreza Paraan
Sprague Dawley Rat
170
170
  • membrane