All DatasetsDataset: PP7 virus-like particles in E. coli imaged with the crossed laser phase plate switched off (underfocus phase contrast, 2-3 µm)

Run

pt117_ts_001

  • Run ID:RN-36685

Release Date: 2026-09-11

Last Modified: 2026-09-11

key visualization for pt117_ts_001

Photo Caption: Central slab of tomogram 64011 with selected set of annotations.

Run Overview

Tilt Series

Tilt Quality
5 - Excellent
Tilt Range90° (-45.01° to 44.99°)
Tilt Schemedose-symmetric

Tomogram

Samplings Available
  • 5.003Å,
  • 10.403Å
Tomogram Processing
  • denoised,
  • filtered,
  • raw

Objects

  • membrane,
  • virus-like capsid
Browse Run Contents

Tomograms

8 of 8 Tomograms

Tomogram Name
Deposition Date
Alignment ID
Voxel Spacing
Reconstruction Method
Post Processing
Software
key visualization for pt117_ts_001

64011 WBP Filtered

Tomogram ID: TM-64011
Author Submitted
  • Mohammadreza Paraan,
  • ... ,
  • Bridget Carragher,
  • David Agard
2026-09-11

AL-37977

5.003Å
(1842, 1310, 512)px
WBP
filtered
Reconstruction SoftwareAreTomo3 v2.3.1
Processing SoftwareAreTomo3 v2.3.1
key visualization for pt117_ts_001

64005 SART Raw

Tomogram ID: TM-64005
Author Submitted
  • Mohammadreza Paraan,
  • ... ,
  • Bridget Carragher,
  • David Agard
2026-09-11

AL-37977

10.403Å
(886, 630, 246)px
SART
raw
Reconstruction SoftwareAreTomo3 v2.3.1
Processing SoftwareAreTomo3 v2.3.1
key visualization for pt117_ts_001

64004 WBP Raw

Tomogram ID: TM-64004
Author Submitted
  • Mohammadreza Paraan,
  • ... ,
  • Bridget Carragher,
  • David Agard
2026-09-11

AL-37977

10.403Å
(886, 630, 246)px
WBP
raw
Reconstruction SoftwareAreTomo3 v2.3.1
Processing SoftwareAreTomo3 v2.3.1
key visualization for pt117_ts_001

64010 WBP Denoised

Tomogram ID: TM-64010
  • Mohammadreza Paraan,
  • ... ,
  • Bridget Carragher,
  • David Agard
2026-09-11

AL-37978

10.403Å
(886, 630, 246)px
WBP
denoised
Reconstruction SoftwareAreTomo3 v2.3.0
Processing SoftwareIsoNet2
key visualization for pt117_ts_001

64009 WBP Denoised

Tomogram ID: TM-64009
  • Mohammadreza Paraan,
  • ... ,
  • Bridget Carragher,
  • David Agard
2026-09-11

AL-37978

10.403Å
(886, 630, 246)px
WBP
denoised
Reconstruction SoftwareAreTomo3 v2.3.0
Processing SoftwareDeepDeWedge
key visualization for pt117_ts_001

64008 Fourier Space Filtered

Tomogram ID: TM-64008
  • Mohammadreza Paraan,
  • ... ,
  • Bridget Carragher,
  • David Agard
2026-09-11

AL-37978

10.403Å
(886, 630, 246)px
Fourier_Space
filtered
Reconstruction SoftwareWarp 2.0.0
Processing SoftwareWarp 2.0.0
key visualization for pt117_ts_001

64007 WBP Filtered

Tomogram ID: TM-64007
  • Mohammadreza Paraan,
  • ... ,
  • Bridget Carragher,
  • David Agard
2026-09-11

AL-37978

10.403Å
(886, 630, 246)px
WBP
filtered
Reconstruction SoftwareAreTomo3 v2.3.0
Processing SoftwareAreTomo3 v2.3.0
key visualization for pt117_ts_001

64006 WBP Raw

Tomogram ID: TM-64006
  • Mohammadreza Paraan,
  • ... ,
  • Bridget Carragher,
  • David Agard
2026-09-11

AL-37978

10.403Å
(886, 630, 246)px
WBP
raw
Reconstruction SoftwareAreTomo3 v2.3.0
Processing SoftwareAreTomo3 v2.3.0