PP7 virus-like particles in E. coli imaged with the crossed laser phase plate switched off (underfocus phase contrast, 2-3 µm)

  • Dataset ID:DS-10518

Release Date: 2026-09-11

Last Modified: 2026-09-11

key visualization for PP7 virus-like particles in E. coli imaged with the crossed laser phase plate switched off (underfocus phase contrast, 2-3 µm)

Photo Caption: Central slab from a representative tomogram of a Escherichia coli sample with selected set of annotations.

Dataset Overview

Control dataset of the matched-grid crossed laser phase plate (xLPP) comparison: Escherichia coli cells overexpressing PP7 virus-like particles were imaged on the xLPP-equipped Titan Krios G4 with the laser phase plate switched off, using conventional underfocus phase contrast at 2-3 µm target underfocus. Dose-symmetric tilt series (±45°, 3° steps, ~126 e/Ų total) were collected with PACEtomo in SerialEM on a Gatan Celtic detector and processed with AreTomo3 (motion correction, CTF estimation, patch-based alignment, SART and WBP reconstruction); PP7 VLP positions were predicted with Octopi and curated by 2D classification.

Publications

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Related Databases

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Runs

49 of 49 Runs

Run Name
Tilt Series Quality Score
Objects
key visualization for pt117_ts_001
pt117_ts_001

Run ID: RN-36685

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt117_ts_002
pt117_ts_002

Run ID: RN-36686

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt130_ts_001
pt130_ts_001

Run ID: RN-36687

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt130_ts_003
pt130_ts_003

Run ID: RN-36688

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt131_ts_001
pt131_ts_001

Run ID: RN-36689

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt131_ts_002
pt131_ts_002

Run ID: RN-36690

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt133_ts_001
pt133_ts_001

Run ID: RN-36691

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt152_ts_001
pt152_ts_001

Run ID: RN-36692

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt152_ts_002
pt152_ts_002

Run ID: RN-36693

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt166_ts_001
pt166_ts_001

Run ID: RN-36694

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt166_ts_002
pt166_ts_002

Run ID: RN-36695

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt167_ts_001
pt167_ts_001

Run ID: RN-36696

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt168_ts_001
pt168_ts_001

Run ID: RN-36697

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt168_ts_002
pt168_ts_002

Run ID: RN-36698

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt184_ts_001
pt184_ts_001

Run ID: RN-36699

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt184_ts_002
pt184_ts_002

Run ID: RN-36700

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt184_ts_003
pt184_ts_003

Run ID: RN-36701

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt186_ts_002
pt186_ts_002

Run ID: RN-36702

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt1872_ts_002
pt1872_ts_002

Run ID: RN-36703

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt1872_ts_003
pt1872_ts_003

Run ID: RN-36704

5 - Excellent
  • membrane
  • virus-like capsid
  • 1
  • 2
  • 3