All Depositions

Deposition

CryoLens - simulated training data

  • Deposition ID:CZCDP-10335

Release Date: 2025-11-03

Last Modified: 2025-11-03

key visualization for CryoLens - simulated training data

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

The CryoLens training dataset consists of 14,366 synthetic tomograms containing 5.8 million particle instances across 103 protein structures ranging from 150 kDa to 2.7 MDa, with at least 46,000 instances of each particle type. The data was generated using copick-polnet at 10Å voxel spacing with a signal-to-noise ratio of 5.0, incorporating realistic cryo-ET artifacts including noise and missing wedge effects from a tilt-series range of -60° to +60°. The complete dataset totals approximately 12 terabytes, making it one of the largest synthetic training datasets available for cryo-electron tomography.

Authors

Deposition Data

Annotations:1,737

Tomograms:200

Publications

Not Submitted

Related Databases

  • PDB-1G3I

Methods Summary

Annotations
Method Type
Method Details
Method Links
1737
Simulated
polnet-simulated ground truth
Source Code:polnet
+1 more

Deposited Data

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Data Contents

Tilt SeriesNA
FramesNA
CTFNA
AlignmentAvailable

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1,737 of 1,737 Annotations

Annotation Name
Object Shape Type
Method Type
Deposited In

109Flagellin

Annotation ID: AN-101444

Ground Truth
OrientedPoint
Simulated

108Chromosome partition protein MukB

Annotation ID: AN-101443

Ground Truth
OrientedPoint
Simulated

107potassium channel complex

Annotation ID: AN-101442

Ground Truth
OrientedPoint
Simulated

106transcription preinitiation complex

Annotation ID: AN-101441

Ground Truth
OrientedPoint
Simulated

105GCH1 complex

Annotation ID: AN-101440

Ground Truth
OrientedPoint
Simulated

104Hemagglutinin

Annotation ID: AN-101439

Ground Truth
OrientedPoint
Simulated

103Envelope glycoprotein B

Annotation ID: AN-101438

Ground Truth
OrientedPoint
Simulated

102Glutamate receptor ionotropic, delta-1

Annotation ID: AN-101437

Ground Truth
OrientedPoint
Simulated

101RNA-directed RNA polymerase L

Annotation ID: AN-101436

Ground Truth
OrientedPoint
Simulated

100membrane attack complex

Annotation ID: AN-101435

Ground Truth
OrientedPoint
Simulated

106Inositol 1,4,5-trisphosphate-gated calcium channel ITPR3

Annotation ID: AN-101434

Ground Truth
OrientedPoint
Simulated

105Myosin-7

Annotation ID: AN-101433

Ground Truth
OrientedPoint
Simulated

104Gag-Pol polyprotein

Annotation ID: AN-101432

Ground Truth
OrientedPoint
Simulated

103Neuraminidase

Annotation ID: AN-101431

Ground Truth
OrientedPoint
Simulated

102acetylcholine-gated channel complex

Annotation ID: AN-101430

Ground Truth
OrientedPoint
Simulated

101No mechanoreceptor potential C isoform L

Annotation ID: AN-101429

Ground Truth
OrientedPoint
Simulated

100Surface layer protein

Annotation ID: AN-101428

Ground Truth
OrientedPoint
Simulated

108Inositol 1,4,5-trisphosphate-gated calcium channel ITPR3

Annotation ID: AN-101427

Ground Truth
OrientedPoint
Simulated

107cullin-RING ubiquitin ligase complex

Annotation ID: AN-101426

Ground Truth
OrientedPoint
Simulated

106transcription preinitiation complex

Annotation ID: AN-101425

Ground Truth
OrientedPoint
Simulated
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