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Deposition

Training annotations and octopi predictions of ribosomes in unroofed human cells

  • Deposition ID:CZCDP-10333

Release Date: 2025-09-17

Last Modified: 2025-09-17

key visualization for Training annotations and octopi predictions of ribosomes in unroofed human cells

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

This deposition provides manual and automated annotations of cytosolic ribosomes in cryo-electron tomograms of unroofed human cells. Manual annotations were created using the copick-toolkit and used to train an octopi object detection model. The trained model was used to localize candidate particles, which were then subjected to subtomogram averaging and classification using RELION 5.0. The final set of automated annotations is the set of particles that contributed to the highest-quality ribosome average (7.5 Å final resolution).

Deposition Data

Annotations:44

Publications

Not Submitted

Related Databases

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Methods Summary

Annotations
Method Type
Method Details
Method Links
38
Automated
octopi particle prediction → RELION 5 subtomogram averaging and classification
Source Code:RELION
+2 more
6
Manual
manual particle picking using the copick-toolkit
Source Code:Copick documentation
+2 more

Deposited Data

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Data Contents

Tilt SeriesAvailable
FramesAvailable
CTFAvailable
AlignmentAvailable

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44 of 44 Annotations

Annotation Name
Object Shape Type
Method Type
Deposited In

100cytosolic ribosome

Annotation ID: AN-99674

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-99672

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-99670

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-99668

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-99666

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-99664

Ground Truth
Point
Manual

100cytosolic ribosome

Annotation ID: AN-99707

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99706

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99705

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99704

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99703

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99702

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99701

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99700

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99699

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99698

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99697

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99696

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99695

OrientedPoint
Automated

100cytosolic ribosome

Annotation ID: AN-99694

OrientedPoint
Automated
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