Deposition

membrain-seg gas vesicle shell predictions

Deposition ID:CZCDP-10308

Release Date: 2024-06-04

Last Modified: 2024-06-04

Cite

key visualization for membrain-seg gas vesicle shell predictions

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

Gas vesicle shell segmentations predicted using membrain-seg without rescaling and weights MemBrain_seg_v10_alpha.ckpt

Authors

Deposition Data

Annotations:486

Publications

DOI:10.1101/2024.01.05.574336

Related Databases

Not Submitted

Methods Summary

Annotations	Method Type	Method Details	Method Links
486	Automated	Prediction using membrain-seg without rescaling and weights MemBrain_seg_v10_alpha.ckpt	Source Code:membrain-seg +2 more

Deposited Data

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Data Contents

Tilt SeriesAvailable

FramesAvailable

CTFNA

AlignmentAvailable

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486 of 486 Annotations

Annotation Name	Object Shape Type	Method Type	Deposited In
101gas vesicle shell Annotation ID: AN-30968	SegmentationMask	Automated	Dataset: D. flos-aquae AnaGV (wt)Run: pda2022-03-28-91
101gas vesicle shell Annotation ID: AN-30966	SegmentationMask	Automated	Dataset: D. flos-aquae AnaGV (wt)Run: pda2022-03-28-85
101gas vesicle shell Annotation ID: AN-16791	SegmentationMask	Automated	Dataset: D. flos-aquae wtAnaGV (phase plate)Run: pda2022-02-02-1
101gas vesicle shell Annotation ID: AN-16790	SegmentationMask	Automated	Dataset: D. flos-aquae wtAnaGV (phase plate)Run: pda2021-02-02-21
101gas vesicle shell Annotation ID: AN-16789	SegmentationMask	Automated	Dataset: D. flos-aquae wtAnaGV (phase plate)Run: pda2021-02-02-20
101gas vesicle shell Annotation ID: AN-16788	SegmentationMask	Automated	Dataset: D. flos-aquae Gas Vesicles Run: pda2020-11-04-9
101gas vesicle shell Annotation ID: AN-16787	SegmentationMask	Automated	Dataset: D. flos-aquae Gas Vesicles Run: pda2020-11-04-8
101gas vesicle shell Annotation ID: AN-16786	SegmentationMask	Automated	Dataset: D. flos-aquae Gas Vesicles Run: pda2020-11-04-4
101gas vesicle shell Annotation ID: AN-16785	SegmentationMask	Automated	Dataset: D. flos-aquae Gas Vesicles Run: pda2020-11-04-3
101gas vesicle shell Annotation ID: AN-16784	SegmentationMask	Automated	Dataset: D. flos-aquae Gas Vesicles Run: pda2020-11-04-2
101gas vesicle shell Annotation ID: AN-16783	SegmentationMask	Automated	Dataset: D. flos-aquae Gas Vesicles Run: pda2020-11-04-13
101gas vesicle shell Annotation ID: AN-16782	SegmentationMask	Automated	Dataset: D. flos-aquae Gas Vesicles Run: pda2020-11-04-11
101gas vesicle shell Annotation ID: AN-16781	SegmentationMask	Automated	Dataset: D. flos-aquae Gas Vesicles Run: pda2020-11-04-10
101gas vesicle shell Annotation ID: AN-16780	SegmentationMask	Automated	Dataset: D. flos-aquae AnaGV (wt)Run: pda2022-03-28-99
101gas vesicle shell Annotation ID: AN-16779	SegmentationMask	Automated	Dataset: D. flos-aquae AnaGV (wt)Run: pda2022-03-28-98
101gas vesicle shell Annotation ID: AN-16778	SegmentationMask	Automated	Dataset: D. flos-aquae AnaGV (wt)Run: pda2022-03-28-97
101gas vesicle shell Annotation ID: AN-16777	SegmentationMask	Automated	Dataset: D. flos-aquae AnaGV (wt)Run: pda2022-03-28-94
101gas vesicle shell Annotation ID: AN-16776	SegmentationMask	Automated	Dataset: D. flos-aquae AnaGV (wt)Run: pda2022-03-28-93
101gas vesicle shell Annotation ID: AN-16775	SegmentationMask	Automated	Dataset: D. flos-aquae AnaGV (wt)Run: pda2022-03-28-92
101gas vesicle shell Annotation ID: AN-16772	SegmentationMask	Automated	Dataset: D. flos-aquae AnaGV (wt)Run: pda2022-03-28-90