Deposition

Membrane segmentations of denoised tomograms

Deposition ID:CZCDP-10304

Release Date: 2024-06-03

Last Modified: 2024-04-12

Cite

key visualization for Membrane segmentations of denoised tomograms

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

Membrane segmentations using membrain-seg of tomograms denoised using a custom algorithm.

Authors

Deposition Data

Annotations:99

Publications

DOI:10.1101/2024.01.05.574336

Related Databases

Not Submitted

Methods Summary

Annotations	Method Type	Method Details	Method Links
99	Hybrid	Tomogram Denoising + 3D-U-Net Based Membrane Segmentation + Manual Post-Processing	Source Code:membrain-seg +1 more

Deposited Data

Group by

Data Contents

Tilt SeriesAvailable

FramesAvailable

CTFNA

AlignmentAvailable

Filter by:

99 of 99 Annotations

Annotation Name	Object Shape Type	Method Type	Deposited In
102membrane Annotation ID: AN-30905	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_85_2
102membrane Annotation ID: AN-30904	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_83_3
102membrane Annotation ID: AN-30903	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_74_2
102membrane Annotation ID: AN-30902	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_64
102membrane Annotation ID: AN-30901	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_604
102membrane Annotation ID: AN-30900	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_580_2
102membrane Annotation ID: AN-30899	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_575
102membrane Annotation ID: AN-30898	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_552
102membrane Annotation ID: AN-30897	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_543
102membrane Annotation ID: AN-30896	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_52_3
102membrane Annotation ID: AN-30895	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_527
102membrane Annotation ID: AN-30894	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_525
102membrane Annotation ID: AN-30893	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_523_2
102membrane Annotation ID: AN-30892	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_523
102membrane Annotation ID: AN-30891	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_522_3
102membrane Annotation ID: AN-30890	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_522_2
102membrane Annotation ID: AN-30889	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_522
102membrane Annotation ID: AN-30888	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_521_2
102membrane Annotation ID: AN-30887	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_51_3
102membrane Annotation ID: AN-30886	SegmentationMask	Hybrid	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_51_2