Deposition

membrain-seg membrane predictions

Deposition ID:CZCDP-10303

Release Date: 2024-05-20

Last Modified: 2024-05-20

key visualization for membrain-seg membrane predictions

Deposition Overview

Membrane segmentations predicted using membrain-seg without rescaling and weights MemBrain_seg_v10_alpha.ckpt

Authors

Utz Heinrich Ermel, Kyle I. S. Harrington

Deposition Data

Annotations:14,400

Publications

DOI:10.1101/2024.01.05.574336

Related Databases

Not Submitted

Annotation Methods Summary

Method Type

Automated

Method Links

Source Code:membrain-seg on GitHub

Datasets with Deposition Data

287 of 287 Datasets

Organism	Runs With deposition data	Annotations Deposition only	Annotated Objects Deposition only
Severe acute respiratory syndrome coronavirus 2 Dataset ID: DS-10006 Zunlong Ke, Joaquin Oton, Kun Qu, ... , John Briggs	Severe acute respiratory syndrome coronavirus 2	156	156	membrane SARS-CoV2 spike protein
70S ribosome with chloramphenicol Dataset ID: DS-10003 Tegunov Dimitry, Xue Liang, ... , Cramer Patrick, Julia Mahamid	Mycoplasma pneumoniae	65	65	cytosolic ribosome membrane
H.pylori 26695 delta-PAI / AGS Dataset ID: DS-10149 Yi-Wei Chang, Grant Jensen	Helicobacter pylori	37	37	membrane
Vibrio delta-CheA1 Dataset ID: DS-10274 Ariane Briegel, Grant Jensen	Vibrio cholerae	28	28	membrane
Sulfolobus solfac.P2+STIV 24 hour Post infection Dataset ID: DS-10114 Rasika Ramdasi, Grant Jensen	Sulfolobus solfataricus	21	21	membrane
HUVECs-pNLGFP-VPS4DN Dataset ID: DS-10186 Cora Woodward, Grant Jensen	Homo sapiens	20	20	membrane
V. cholerae delta CheA1,2,3 Dataset ID: DS-10263 Ariane Briegel, Grant Jensen	Vibrio cholerae	18	18	membrane
L. pneumophila JV3579_inPolara Dataset ID: DS-10071 Debnath Ghosal, Grant Jensen	Legionella pneumophila	71	71	membrane
M. pneumoniae MP PrkC 27.5KX Dataset ID: DS-10296 Jian Shi, Grant Jensen	Mycoplasma pneumoniae	65	65	membrane
Cryo-sectioned Jurkat VSVG-pNL4GFP Dataset ID: DS-10170 Cora Woodward, Grant Jensen	Homo sapiens	36	36	membrane
G. hansenii gh7-2 Dataset ID: DS-10032 William Nicolas, Grant Jensen	Gluconacetobacter hansenii	4	4	membrane
E. coli pLE7_1mM_IPTG Dataset ID: DS-10193 Matt Swulius, Grant Jensen	Escherichia coli	15	15	membrane
T. primitia proteinase K Dataset ID: DS-10252 Elitza Tocheva, Grant Jensen	Treponema primitia	18	18	membrane
G. hansenii gh6-3 Dataset ID: DS-10031 William Nicolas, Grant Jensen	Gluconacetobacter hansenii	1	1	membrane
G. hansenii gh7-3 Dataset ID: DS-10033 William Nicolas, Grant Jensen	Gluconacetobacter hansenii	6	6	membrane
Pseudomonas aeruginosa Dataset ID: DS-10040 Mohammed Kaplan, Grant Jensen	Pseudomonas aeruginosa	127	127	membrane
Pseudomonas aeruginosa_JT2944 Dataset ID: DS-10041 Mohammed Kaplan, Grant Jensen	Pseudomonas aeruginosa	81	81	membrane
WT Salmonella minicell-producing strain 17261, 5hr growth Dataset ID: DS-10238 Morgan Beeby, Grant Jensen	Salmonella typhimurium	9	9	membrane
Paeruginosa_dfliG Dataset ID: DS-10039 Mohammed Kaplan, Grant Jensen	Pseudomonas aeruginosa	22	22	membrane
Bsubtilis_ponA_sacculi Dataset ID: DS-10246 Elitza Tocheva, Grant Jensen	Bacillus subtilis	9	9	membrane