Deposition

membrain-seg membrane predictions

Deposition ID:CZCDP-10303

Release Date: 2024-05-20

Last Modified: 2024-05-20

key visualization for membrain-seg membrane predictions

Deposition Overview

Membrane segmentations predicted using membrain-seg without rescaling and weights MemBrain_seg_v10_alpha.ckpt

Authors

Utz Heinrich Ermel, Kyle I. S. Harrington

Deposition Data

Annotations:14,400

Publications

DOI:10.1101/2024.01.05.574336

Related Databases

Not Submitted

Annotation Methods Summary

Method Type

Automated

Method Links

Source Code:membrain-seg on GitHub

Datasets with Deposition Data

287 of 287 Datasets

Dataset Name	Organism	Runs With deposition data	Annotations Deposition only	Annotated Objects Deposition only
Severe acute respiratory syndrome coronavirus 2 Dataset ID: DS-10006 Zunlong Ke, Joaquin Oton, Kun Qu, ... , John Briggs	Severe acute respiratory syndrome coronavirus 2	156	100	membrane
E. coli (pLE6, 20 um IPTG) Dataset ID: DS-10190 Matt Swulius, Grant Jensen	Escherichia coli	24	24	membrane
V. cholerae Dataset ID: DS-10197 Martin Pilhofer, Grant Jensen	Vibrio cholerae	85	85	membrane
Bdellovibrio attack-phase Dataset ID: DS-10155 Yi-Wei Chang, Grant Jensen	Bdellovibrio bacteriovorus	105	100	membrane
C. burnetii Coxiella_ Verocells_28dpi Dataset ID: DS-10056 Debnath Ghosal, Grant Jensen	Coxiella burnetii	224	100	membrane
H.pylori 26695 delta-PAI Dataset ID: DS-10148 Yi-Wei Chang, Grant Jensen	Helicobacter pylori	61	61	membrane
M. magneticum dK203_3h_induced Dataset ID: DS-10122 Poorna Subramanian, Grant Jensen	Magnetospirillum magneticum	13	13	membrane
Vibrio cholerae (GFP-MreB) Dataset ID: DS-10194 Matt Swulius, Grant Jensen	Vibrio cholerae	32	32	membrane
HUVECs C65_HuvecspNL24h_11122012 Dataset ID: DS-10174 Cora Woodward, Grant Jensen	Homo sapiens	99	99	membrane
L. pneumophila JV1180_∆dotUF Dataset ID: DS-10061 Debnath Ghosal, Grant Jensen	Legionella pneumophila	99	99	membrane
High magnification tomograms of whole WT Campylobacter cells Dataset ID: DS-10218 Morgan Beeby, Grant Jensen	Campylobacter jejuni	178	98	membrane
Helicobacter_pylori_dFliG Dataset ID: DS-10046 Mohammed Kaplan, Grant Jensen	Helicobacter pylori	47	47	membrane
L. pneumophila Lp02_2nd Dataset ID: DS-10097 Debnath Ghosal, Grant Jensen	Legionella pneumophila	95	95	membrane
M. magneticum dK203_8h_induced Dataset ID: DS-10123 Poorna Subramanian, Grant Jensen	Magnetospirillum magneticum	11	11	membrane
M. magneticum magnetosome induced t4 Dataset ID: DS-10131 Poorna Subramanian, Grant Jensen	Magnetospirillum magneticum	14	14	membrane
H-pylori_dFliM_GC Dataset ID: DS-10043 Mohammed Kaplan, Grant Jensen	Helicobacter pylori	176	88	membrane
M. pneumoniae P41 + P24 cat Dataset ID: DS-10254 Songye Chen, Grant Jensen	Mycoplasma pneumoniae	17	17	membrane
High magnification tomograms of whole FlgP mutant Campylobacter cells Dataset ID: DS-10215 Morgan Beeby, Grant Jensen	Campylobacter jejuni	27	27	membrane
P. aeruginosa PAO1 Wild Type Dataset ID: DS-10278 Ariane Briegel, Grant Jensen	Pseudomonas aeruginosa	25	25	membrane
L. pneumophila JV3559_Janelia Dataset ID: DS-10066 Debnath Ghosal, Grant Jensen	Legionella pneumophila	100	100	membrane