Deposition

TARDIS membrane predictions

Deposition ID:CZCDP-10301

Release Date: 2024-02-20

Last Modified: 2024-02-20

key visualization for TARDIS membrane predictions

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

Voxel-based and instance segmentations of membranes predicted using TARDIS.

Authors

Robert Kiewisz
,
Tristan Bepler

Deposition Data

Annotations:12,951

Publications

DOI:10.1093/micmic/ozad067.485

Related Databases

Not Submitted

Annotation Methods Summary

Method Type

Automated

Method Links

Source Code:TARDIS on GitHub
Documentation:TARDIS documentation

Datasets with Deposition Data

295 of 295 Datasets

Dataset Name	Organism	Runs With deposition data	Annotations Deposition only	Annotated Objects Deposition only
Severe acute respiratory syndrome coronavirus 2 Dataset ID: DS-10006 Zunlong Ke, Joaquin Oton, Kun Qu, ... , John Briggs	Severe acute respiratory syndrome coronavirus 2	156	156	membrane
Bdellovibrio attack-phase Dataset ID: DS-10155 Yi-Wei Chang, Grant Jensen	Bdellovibrio bacteriovorus	103	103	membrane
D. flos-aquae Gas Vesicles Dataset ID: DS-10017 Przemek Dutka, Grant Jensen	Dolichospermum flos-aquae	8	8	membrane
V. cholerae Dataset ID: DS-10197 Martin Pilhofer, Grant Jensen	Vibrio cholerae	88	88	membrane
D. flos-aquae AnaGV (wt) Dataset ID: DS-10016 Przemek Dutka, Grant Jensen	Dolichospermum flos-aquae	162	162	membrane
L. pneumophila JV1180_∆dotUF Dataset ID: DS-10061 Debnath Ghosal, Grant Jensen	Legionella pneumophila	96	96	membrane
D. flos-aquae Ana GVs delGvpC Dataset ID: DS-10015 Przemek Dutka, Grant Jensen	Dolichospermum flos-aquae	103	103	membrane
Vibrio cholerae (GFP-MreB) Dataset ID: DS-10194 Matt Swulius, Grant Jensen	Vibrio cholerae	32	32	membrane
Campy FlhA(c) truncation Dataset ID: DS-10204 Morgan Beeby, Grant Jensen	Campylobacter jejuni	8	8	membrane
H-pylori_dFliM_GC Dataset ID: DS-10043 Mohammed Kaplan, Grant Jensen	Helicobacter pylori	180	180	membrane
Helicobacter_pylori_dFliG Dataset ID: DS-10046 Mohammed Kaplan, Grant Jensen	Helicobacter pylori	43	43	membrane
G. hansenii gh2-2 Dataset ID: DS-10028 William Nicolas, Grant Jensen	Gluconacetobacter hansenii	13	13	membrane
M. magneticum dK203_8h_induced Dataset ID: DS-10123 Poorna Subramanian, Grant Jensen	Magnetospirillum magneticum	11	11	membrane
M. magneticum magnetosome induced t4 Dataset ID: DS-10131 Poorna Subramanian, Grant Jensen	Magnetospirillum magneticum	14	14	membrane
L. pneumophila JV1644 Legionella thyA ∆dotO Dataset ID: DS-10063 Debnath Ghosal, Grant Jensen	Legionella pneumophila	120	120	membrane
L. pneumophila Legionella IcmQ71::TevS 30C_Off Dataset ID: DS-10089 Debnath Ghosal, Grant Jensen	Legionella pneumophila	35	35	membrane
M. magneticum magnetosome induced t6 Dataset ID: DS-10132 Poorna Subramanian, Grant Jensen	Magnetospirillum magneticum	4	4	membrane
L. pneumophila JV7091_∆dotEP Dataset ID: DS-10079 Debnath Ghosal, Grant Jensen	Legionella pneumophila	122	122	membrane
G. hansenii gh2-4 Dataset ID: DS-10029 William Nicolas, Grant Jensen	Gluconacetobacter hansenii	12	12	membrane
M. magneticum dK203_3h_induced Dataset ID: DS-10122 Poorna Subramanian, Grant Jensen	Magnetospirillum magneticum	13	13	membrane