Deposition

TARDIS membrane predictions

Deposition ID:CZCDP-10301

Release Date: 2024-02-20

Last Modified: 2024-02-20

key visualization for TARDIS membrane predictions

Deposition Overview

Voxel-based and instance segmentations of membranes predicted using TARDIS.

Authors

Robert Kiewisz, Tristan Bepler

Deposition Data

Annotations:12,969

Publications

DOI:10.1093/micmic/ozad067.485

Related Databases

Not Submitted

Annotation Methods Summary

Method Type

Automated

Method Links

Source Code:TARDIS on GitHub
Documentation:TARDIS documentation

Datasets with Deposition Data

295 of 295 Datasets

Dataset Name	Organism	Runs With deposition data	Annotations Deposition only	Annotated Objects Deposition only
Severe acute respiratory syndrome coronavirus 2 Dataset ID: DS-10006 Zunlong Ke, Joaquin Oton, Kun Qu, ... , John Briggs	Severe acute respiratory syndrome coronavirus 2	156	100	membrane
E. coli (pLE6, 20 um IPTG) Dataset ID: DS-10190 Matt Swulius, Grant Jensen	Escherichia coli	24	24	membrane
V. cholerae Dataset ID: DS-10197 Martin Pilhofer, Grant Jensen	Vibrio cholerae	88	88	membrane
D. flos-aquae Ana GVs delGvpC Dataset ID: DS-10015 Przemek Dutka, Grant Jensen	Dolichospermum flos-aquae	103	100	membrane
Bdellovibrio attack-phase Dataset ID: DS-10155 Yi-Wei Chang, Grant Jensen	Bdellovibrio bacteriovorus	103	98	membrane
C. burnetii Coxiella_ Verocells_28dpi Dataset ID: DS-10056 Debnath Ghosal, Grant Jensen	Coxiella burnetii	224	100	membrane
H.pylori 26695 delta-PAI Dataset ID: DS-10148 Yi-Wei Chang, Grant Jensen	Helicobacter pylori	61	61	membrane
M. magneticum dK203_3h_induced Dataset ID: DS-10122 Poorna Subramanian, Grant Jensen	Magnetospirillum magneticum	13	13	membrane
Vibrio cholerae (GFP-MreB) Dataset ID: DS-10194 Matt Swulius, Grant Jensen	Vibrio cholerae	32	32	membrane
HUVECs C65_HuvecspNL24h_11122012 Dataset ID: DS-10174 Cora Woodward, Grant Jensen	Homo sapiens	99	99	membrane
L. pneumophila JV1180_∆dotUF Dataset ID: DS-10061 Debnath Ghosal, Grant Jensen	Legionella pneumophila	99	99	membrane
High magnification tomograms of whole WT Campylobacter cells Dataset ID: DS-10218 Morgan Beeby, Grant Jensen	Campylobacter jejuni	10	0	--
Helicobacter_pylori_dFliG Dataset ID: DS-10046 Mohammed Kaplan, Grant Jensen	Helicobacter pylori	43	43	membrane
L. pneumophila Lp02_2nd Dataset ID: DS-10097 Debnath Ghosal, Grant Jensen	Legionella pneumophila	95	95	membrane
M. magneticum dK203_8h_induced Dataset ID: DS-10123 Poorna Subramanian, Grant Jensen	Magnetospirillum magneticum	11	11	membrane
M. magneticum magnetosome induced t4 Dataset ID: DS-10131 Poorna Subramanian, Grant Jensen	Magnetospirillum magneticum	14	14	membrane
H-pylori_dFliM_GC Dataset ID: DS-10043 Mohammed Kaplan, Grant Jensen	Helicobacter pylori	180	88	membrane
M. pneumoniae P41 + P24 cat Dataset ID: DS-10254 Songye Chen, Grant Jensen	Mycoplasma pneumoniae	17	17	membrane
High magnification tomograms of whole FlgP mutant Campylobacter cells Dataset ID: DS-10215 Morgan Beeby, Grant Jensen	Campylobacter jejuni	28	28	membrane
P. aeruginosa PAO1 Wild Type Dataset ID: DS-10278 Ariane Briegel, Grant Jensen	Pseudomonas aeruginosa	25	25	membrane