Deposition

Structures and distributions of severe acute respiratory syndrome coronavirus 2 spike proteins

Deposition ID:CZCDP-10006

Release Date: 2023-12-10

Last Modified: 2023-11-20

key visualization for Structures and distributions of severe acute respiratory syndrome coronavirus 2 spike proteins

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

Cryo-electron tomograms of SARS-CoV-2 spike proteins on intact virions with annotations of spike proteins, refined using RELION.

Authors

Zunlong Ke
,
Joaquin Oton
,
Kun Qu
,
Mirko Cortese
,
Vojtech Zila
,
Lesley McKeane
,
Takanori Nakane
,
Jasenko Zivanov
,
Christopher Neufeldt
,
Berati Cerikan
,
John Lu
,
Julia Peukes
,
Xiaoli Xiong
,
Hans-Georg Kräusslich
,
Sjors H. W. Scheres
,
Ralf Bartenschlager
,
John Briggs

Deposition Data

Annotations:156

Publications

DOI:10.1038/s41586-020-2665-2

Related Databases

EMPIAR ID:EMPIAR-10493

Methods Summary

Annotations	Method Type	Method Details	Method Links

Deposited Data

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Data Contents

Tilt SeriesNA

FramesNA

CTFNA

AlignmentAvailable

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156 of 156 Annotations

Annotation Name	Object Shape Type	Method Type	Deposited In
100SARS-CoV2 spike protein Annotation ID: AN-1609 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_214
100SARS-CoV2 spike protein Annotation ID: AN-1608 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_213
100SARS-CoV2 spike protein Annotation ID: AN-1607 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_211
100SARS-CoV2 spike protein Annotation ID: AN-1606 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_210
100SARS-CoV2 spike protein Annotation ID: AN-1605 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_209
100SARS-CoV2 spike protein Annotation ID: AN-1604 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_207
100SARS-CoV2 spike protein Annotation ID: AN-1603 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_206
100SARS-CoV2 spike protein Annotation ID: AN-1602 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_205
100SARS-CoV2 spike protein Annotation ID: AN-1601 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_204
100SARS-CoV2 spike protein Annotation ID: AN-1600 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_201
100SARS-CoV2 spike protein Annotation ID: AN-1599 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_200
100SARS-CoV2 spike protein Annotation ID: AN-1598 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_199
100SARS-CoV2 spike protein Annotation ID: AN-1597 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_198
100SARS-CoV2 spike protein Annotation ID: AN-1596 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_197
100SARS-CoV2 spike protein Annotation ID: AN-1595 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_195
100SARS-CoV2 spike protein Annotation ID: AN-1594 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_194
100SARS-CoV2 spike protein Annotation ID: AN-1593 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_193
100SARS-CoV2 spike protein Annotation ID: AN-1592 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_192
100SARS-CoV2 spike protein Annotation ID: AN-1591 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_191
100SARS-CoV2 spike protein Annotation ID: AN-1590 Ground Truth	OrientedPoint	Hybrid	Dataset: Severe acute respiratory syndrome coronavirus 2 Run: TS_189