Deposition

C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms

Deposition ID:CZCDP-10004

Release Date: 2023-06-01

Last Modified: 2023-06-01

key visualization for C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

Cryo-electron tomograms from double-sided attachment Serial Lift-Out experiment of C. elegans, including annotations of ribosomes identified and refined using STOPGAP and RELION.

Authors

Deposition Data

Annotations:100

Tomograms:100

Publications

DOI:10.1101/2023.04.28.538734

Related Databases

EMDB ID:EMD-17241

Methods Summary

Annotations	Method Type	Method Details	Method Links
100	Automated	Template matching + 2D classification filtering	Not Submitted

Deposited Data

Group by

Data Contents

Tilt SeriesAvailable

FramesAvailable

CTFNA

AlignmentAvailable

Filter by:

100 of 100 Annotations

Annotation Name	Object Shape Type	Method Type	Deposited In
100cytosolic ribosome Annotation ID: AN-15371	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_85_2
100cytosolic ribosome Annotation ID: AN-15370	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_83_3
100cytosolic ribosome Annotation ID: AN-15369	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_74_2
100cytosolic ribosome Annotation ID: AN-15368	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_64
100cytosolic ribosome Annotation ID: AN-15367	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_604
100cytosolic ribosome Annotation ID: AN-15366	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_580_2
100cytosolic ribosome Annotation ID: AN-15365	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_575
100cytosolic ribosome Annotation ID: AN-15364	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_552
100cytosolic ribosome Annotation ID: AN-15363	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_543
100cytosolic ribosome Annotation ID: AN-15362	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_52_3
100cytosolic ribosome Annotation ID: AN-15361	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_527
100cytosolic ribosome Annotation ID: AN-15360	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_525
100cytosolic ribosome Annotation ID: AN-15359	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_523_2
100cytosolic ribosome Annotation ID: AN-15358	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_523
100cytosolic ribosome Annotation ID: AN-15357	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_522_3
100cytosolic ribosome Annotation ID: AN-15356	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_522_2
100cytosolic ribosome Annotation ID: AN-15355	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_522
100cytosolic ribosome Annotation ID: AN-15354	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_521_2
100cytosolic ribosome Annotation ID: AN-15353	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_51_3
100cytosolic ribosome Annotation ID: AN-15352	Point	Automated	Dataset: C. Elegans from Serial Lift-Out – Sampling the Molecular Anatomy of Whole Organisms Run: Position_51_2