Cryo-electron tomography of a cryo-FIB lift-out from adult mouse cortex

  • Dataset ID:DS-10528

Release Date: 2026-09-04

Last Modified: 2026-09-04

key visualization for Cryo-electron tomography of a cryo-FIB lift-out from adult mouse cortex

Photo Caption: Central slab from a representative tomogram of a Mus musculus sample with selected set of annotations.

Dataset Overview

This dataset contains in situ cryo-electron tomography of vitreous adult mouse (C57BL/6J) cortical tissue, acquired to assess the quality of brain cryo-fixation achieved by a targeted molecular-biopsy workflow. A 200 um sagittal slice from a 144-day-old female mouse was biopsy-punched directly from the cortex, incubated for 30 min with a dextran/sucrose cryoprotectant, and vitrified by high-pressure freezing. Serial cryo-lift-out sections were excavated by xenon plasma focused-ion-beam (PFIB) milling, welded onto TEM support grids and thinned to ~150-300 nm lamellae with a final argon polish, revealing myelin, synaptic vesicles, mitochondria, membranes, ribosomes and microtubules together with the extracellular space preserved by vitrification. Tilt series were acquired on a Titan Krios G4 (300 kV) with a Selectris energy filter and Falcon 4i detector.

Related Databases

Runs

29 of 29 Runs

Run Name
Tilt Series Quality Score
Objects
key visualization for Position035
Position035

Run ID: RN-36482

4 - Good
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key visualization for Position036
Position036

Run ID: RN-36483

4 - Good
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key visualization for Position037
Position037

Run ID: RN-36484

4 - Good
  • membrane
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key visualization for Position038
Position038

Run ID: RN-36485

4 - Good
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key visualization for Position039
Position039

Run ID: RN-36486

5 - Excellent
  • membrane
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key visualization for Position040
Position040

Run ID: RN-36487

5 - Excellent
  • membrane
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key visualization for Position041
Position041

Run ID: RN-36488

3 - Moderate
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key visualization for Position042
Position042

Run ID: RN-36489

4 - Good
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key visualization for Position043
Position043

Run ID: RN-36490

4 - Good
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key visualization for Position044
Position044

Run ID: RN-36491

4 - Good
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key visualization for Position045
Position045

Run ID: RN-36492

4 - Good
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key visualization for Position046
Position046

Run ID: RN-36493

4 - Good
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key visualization for Position047
Position047

Run ID: RN-36494

4 - Good
  • membrane
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key visualization for Position048
Position048

Run ID: RN-36495

4 - Good
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key visualization for Position049
Position049

Run ID: RN-36496

4 - Good
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key visualization for Position050
Position050

Run ID: RN-36497

4 - Good
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key visualization for Position051
Position051

Run ID: RN-36498

4 - Good
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key visualization for Position052
Position052

Run ID: RN-36499

4 - Good
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key visualization for Position053
Position053

Run ID: RN-36500

3 - Moderate
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key visualization for Position054
Position054

Run ID: RN-36501

3 - Moderate
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