Dataset
Cryo-electron tomography of a cryo-FIB lift-out from adult mouse cortex
- Dataset ID:DS-10528
Release Date: 2026-09-04
Last Modified: 2026-09-04

Photo Caption: Central slab from a representative tomogram of a Mus musculus sample with selected set of annotations.
Dataset Overview
This dataset contains in situ cryo-electron tomography of vitreous adult mouse (C57BL/6J) cortical tissue, acquired to assess the quality of brain cryo-fixation achieved by a targeted molecular-biopsy workflow. A 200 um sagittal slice from a 144-day-old female mouse was biopsy-punched directly from the cortex, incubated for 30 min with a dextran/sucrose cryoprotectant, and vitrified by high-pressure freezing. Serial cryo-lift-out sections were excavated by xenon plasma focused-ion-beam (PFIB) milling, welded onto TEM support grids and thinned to ~150-300 nm lamellae with a final argon polish, revealing myelin, synaptic vesicles, mitochondria, membranes, ribosomes and microtubules together with the extracellular space preserved by vitrification. Tilt series were acquired on a Titan Krios G4 (300 kV) with a Selectris energy filter and Falcon 4i detector.
Authors
Publications
Related Databases
EMPIAR ID:EMPIAR-13304
Runs
29 of 29 Runs
Run Name | Tilt Series Quality Score | Objects | ||
|---|---|---|---|---|
Position035 Run ID: RN-36482 | 4 - Good |
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Position036 Run ID: RN-36483 | 4 - Good |
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Position037 Run ID: RN-36484 | 4 - Good |
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Position038 Run ID: RN-36485 | 4 - Good |
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Position039 Run ID: RN-36486 | 5 - Excellent |
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Position040 Run ID: RN-36487 | 5 - Excellent |
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Position041 Run ID: RN-36488 | 3 - Moderate |
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Position042 Run ID: RN-36489 | 4 - Good |
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Position043 Run ID: RN-36490 | 4 - Good |
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Position044 Run ID: RN-36491 | 4 - Good |
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Position045 Run ID: RN-36492 | 4 - Good |
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Position046 Run ID: RN-36493 | 4 - Good |
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Position047 Run ID: RN-36494 | 4 - Good |
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Position048 Run ID: RN-36495 | 4 - Good |
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Position049 Run ID: RN-36496 | 4 - Good |
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Position050 Run ID: RN-36497 | 4 - Good |
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Position051 Run ID: RN-36498 | 4 - Good |
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Position052 Run ID: RN-36499 | 4 - Good |
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Position053 Run ID: RN-36500 | 3 - Moderate |
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Position054 Run ID: RN-36501 | 3 - Moderate |
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