PP7 virus-like particles in E. coli imaged with the crossed laser phase plate (xLPP) at 2-3 µm underfocus

  • Dataset ID:DS-10519

Release Date: 2026-09-11

Last Modified: 2026-09-11

key visualization for PP7 virus-like particles in E. coli imaged with the crossed laser phase plate (xLPP) at 2-3 µm underfocus

Photo Caption: Central slab from a representative tomogram of a Escherichia coli sample with selected set of annotations.

Dataset Overview

Escherichia coli cells overexpressing PP7 virus-like particles imaged on a Titan Krios G4 with the crossed laser phase plate (xLPP) switched on, at 2-3 µm target underfocus, as part of a matched-grid comparison with conventional underfocus phase contrast. Dose-symmetric tilt series (nominally ±45°, 3° steps, ~126 e/Ų total; a few series stopped early) were collected using PACEtomo-based SerialEM scripts with electron-to-laser alignments for each tilt on a Gatan Celtic detector and processed with AreTomo3 (motion correction, CTF estimation with additional phase shift, patch-based alignment, SART and WBP reconstruction); PP7 VLP positions were picked with Octopi, curated by 2D classification or picked manually.

Publications

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Related Databases

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Runs

32 of 32 Runs

Run Name
Tilt Series Quality Score
Objects
key visualization for pt398_ts_002
pt398_ts_002

Run ID: RN-36734

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt399_ts_002
pt399_ts_002

Run ID: RN-36735

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt414_ts_002
pt414_ts_002

Run ID: RN-36736

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt4263_ts_002
pt4263_ts_002

Run ID: RN-36737

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt433_ts_002
pt433_ts_002

Run ID: RN-36738

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt434_ts_002
pt434_ts_002

Run ID: RN-36739

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt435_ts_002
pt435_ts_002

Run ID: RN-36740

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt452_ts_002
pt452_ts_002

Run ID: RN-36741

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt453_ts_002
pt453_ts_002

Run ID: RN-36742

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt4562_ts_002
pt4562_ts_002

Run ID: RN-36743

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt457_ts_002
pt457_ts_002

Run ID: RN-36744

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt458_ts_002
pt458_ts_002

Run ID: RN-36745

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt458_ts_003
pt458_ts_003

Run ID: RN-36746

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt492_ts_002
pt492_ts_002

Run ID: RN-36747

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt493_ts_002
pt493_ts_002

Run ID: RN-36748

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt494_ts_002
pt494_ts_002

Run ID: RN-36749

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt496_ts_002
pt496_ts_002

Run ID: RN-36750

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt497_ts_002
pt497_ts_002

Run ID: RN-36751

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt523_ts_002
pt523_ts_002

Run ID: RN-36752

5 - Excellent
  • membrane
  • virus-like capsid
key visualization for pt525_ts_002
pt525_ts_002

Run ID: RN-36753

5 - Excellent
  • membrane
  • virus-like capsid
  • 1
  • 2