Arabidopsis thaliana pollen tubes

  • Dataset ID:DS-10479

Release Date: 2026-04-28

Last Modified: 2026-04-28

key visualization for Arabidopsis thaliana pollen tubes

Photo Caption: Central slab from a representative tomogram of a Arabidopsis thaliana sample.

Dataset Overview

Collection of cryo-electron tomograms acquired on cryo-FIB-milled lamellae of germinated Arabidopsis thaliana pollen tubes. Lamellae were milled at various distances from the pollen tube tip and reveal dense networks of vesicles and lipid droplets, organelles such as Golgi, endoplasmic reticulum and vacuoles, and the surrounding cell wall. Tilt series were collected on a 300 kV TFS Krios with a Gatan K3 camera using SerialEM with dose-symmetric or bi-directional tilt schemes. Tomograms were reconstructed in IMOD with a SIRT-like filter applied to a weighted back-projection reconstruction.

Publications

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Related Databases

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Runs

47 of 47 Runs

Run Name
Tilt Series Quality Score
Objects
key visualization for pol5-1_lam1_ts2
pol5-1_lam1_ts2

Run ID: RN-34435

2 - Poor
--
key visualization for pol5-1_lam1_ts3
pol5-1_lam1_ts3

Run ID: RN-34436

2 - Poor
--
key visualization for pol5-1_lam1_ts4
pol5-1_lam1_ts4

Run ID: RN-34437

1 - Very Poor
--
key visualization for pol5-2_lam1_ts1
pol5-2_lam1_ts1

Run ID: RN-34438

4 - Good
  • plant-type cell wall
key visualization for pol5-2_lam1_ts2
pol5-2_lam1_ts2

Run ID: RN-34439

4 - Good
  • plant-type cell wall
key visualization for pol5-2_lam1_ts3
pol5-2_lam1_ts3

Run ID: RN-34440

3 - Moderate
  • plant-type cell wall
key visualization for pol5-2_lam1_ts4
pol5-2_lam1_ts4

Run ID: RN-34441

3 - Moderate
  • plant-type cell wall
key visualization for pol5-2_lam1_ts5
pol5-2_lam1_ts5

Run ID: RN-34442

4 - Good
  • plant-type cell wall
key visualization for pol5-2_lam1_ts6
pol5-2_lam1_ts6

Run ID: RN-34443

2 - Poor
--
key visualization for pol5-2_lam1_ts7
pol5-2_lam1_ts7

Run ID: RN-34444

4 - Good
  • endoplasmic reticulum
key visualization for pol5-2_lam1_ts8
pol5-2_lam1_ts8

Run ID: RN-34445

3 - Moderate
  • rough endoplasmic reticulum
key visualization for pol5-2_lam1_ts9
pol5-2_lam1_ts9

Run ID: RN-34446

2 - Poor
  • Golgi apparatus
  • plant-type cell wall
key visualization for pol6-3_lam1_ts1
pol6-3_lam1_ts1

Run ID: RN-34447

1 - Very Poor
--
key visualization for pol6-3_lam1_ts2
pol6-3_lam1_ts2

Run ID: RN-34448

3 - Moderate
--
key visualization for pol6-3_lam2_ts1
pol6-3_lam2_ts1

Run ID: RN-34449

1 - Very Poor
--
key visualization for pol6-3_lam2_ts2
pol6-3_lam2_ts2

Run ID: RN-34450

1 - Very Poor
--
key visualization for pol7-4_lam1_ts1
pol7-4_lam1_ts1

Run ID: RN-34451

5 - Excellent
  • Golgi apparatus
  • plant-type cell wall
  • plant-type vacuole
key visualization for pol7-4_lam1_ts10
pol7-4_lam1_ts10

Run ID: RN-34452

1 - Very Poor
--
key visualization for pol7-4_lam1_ts11
pol7-4_lam1_ts11

Run ID: RN-34453

5 - Excellent
  • cytoplasmic vesicle
  • lipid droplet
key visualization for pol7-4_lam1_ts2
pol7-4_lam1_ts2

Run ID: RN-34454

5 - Excellent
  • cytoskeleton
  • plant-type vacuole
  • 1
  • 2
  • 3