Deposition

CZII - CryoET Object Identification Challenge

Deposition ID:CZCDP-10310

Release Date: 2024-10-30

Last Modified: 2024-02-25

key visualization for CZII - CryoET Object Identification Challenge

Photo Caption: Central slab of 4 representative tomograms with selected sets of annotations.

Deposition Overview

Experimental and simulated training data for the CryoET Object Identification Challenge. Each dataset contains tilt series, alignments, tomograms and ground truth annotations for six protein complexes (Apo-ferritin, Beta-amylase, Beta-galactosidase, cytosolic ribosomes, thyroglobulin and VLP). Curation procedures are described in detail in the accompanying paper. Details on how the dataset is used in the competition are available on the competition page.

Authors

Deposition Data

Annotations:3,462

Publications

Related Databases

EMDB ID:EMD-41923

Methods Summary

Annotations	Method Type	Method Details	Method Links
2782	Hybrid	hybrid curation using CellCanvas, copick, slabpick, deepfindET, topaz, minislab curation and cryoSPARC	Source Code:copick-live +8 more
189	Hybrid	polnet-simulated ground truth	Source Code:polnet
491	Automated	Prediction using membrain-seg without rescaling and weights MemBrain_seg_v10_alpha.ckpt	Source Code:membrain-seg +1 more

Deposited Data

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Data Contents

Tilt SeriesAvailable

FramesAvailable

CTFAvailable

AlignmentAvailable

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3,624 of 3,624 Annotations

Annotation Name	Object Shape Type	Method Type	Deposited In
106virus-like capsid Annotation ID: AN-97111 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
105Thyroglobulin Annotation ID: AN-97110 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
104cytosolic ribosome Annotation ID: AN-97109 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
103Beta-galactosidase Annotation ID: AN-97108 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
102Beta-amylase Annotation ID: AN-97107 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
101ferritin complex Annotation ID: AN-97106 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_9
105virus-like capsid Annotation ID: AN-97052 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_8
104Thyroglobulin Annotation ID: AN-97051 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_8
103cytosolic ribosome Annotation ID: AN-97050 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_8
102Beta-galactosidase Annotation ID: AN-97049 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_8
101ferritin complex Annotation ID: AN-97048 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_8
103cytosolic ribosome Annotation ID: AN-96995 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_7
102Beta-amylase Annotation ID: AN-96994 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_7
101ferritin complex Annotation ID: AN-96993 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_7
105Thyroglobulin Annotation ID: AN-96940 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_5
104cytosolic ribosome Annotation ID: AN-96939 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_5
103Beta-galactosidase Annotation ID: AN-96938 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_5
102Beta-amylase Annotation ID: AN-96937 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_5
101ferritin complex Annotation ID: AN-96936 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_5
106virus-like capsid Annotation ID: AN-96882 Ground Truth	Point	Hybrid	Dataset: CZII - CryoET Object Identification Challenge - Private Test Dataset Run: TS_9_4